Variant report

Variant	rs16904413
Chromosome Location	chr8:132148730-132148731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11776501	0.84[AMR][1000 genomes]
rs11776645	0.84[AMR][1000 genomes]
rs11778567	1.00[AMR][1000 genomes]
rs11778603	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11782471	0.84[AMR][1000 genomes]
rs11784937	1.00[AMR][1000 genomes]
rs11787293	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12677297	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12679474	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13249674	1.00[AMR][1000 genomes]
rs13258869	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13260940	1.00[AMR][1000 genomes]
rs13261265	1.00[AMR][1000 genomes]
rs13269832	1.00[AMR][1000 genomes]
rs13276752	1.00[AMR][1000 genomes]
rs13276850	1.00[AMR][1000 genomes]
rs13281591	1.00[AMR][1000 genomes]
rs1329799	1.00[AMR][1000 genomes]
rs1329800	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1329805	1.00[AMR][1000 genomes]
rs16904398	1.00[AMR][1000 genomes]
rs16904417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615395	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2026755	0.91[AMR][1000 genomes]
rs34359920	1.00[AMR][1000 genomes]
rs34396484	1.00[AMR][1000 genomes]
rs34543428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34620076	1.00[AMR][1000 genomes]
rs35187535	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35631183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687211	1.00[AMR][1000 genomes]
rs4389913	1.00[AMR][1000 genomes]
rs4736464	0.91[AMR][1000 genomes]
rs59232626	0.84[AMR][1000 genomes]
rs59808230	1.00[AMR][1000 genomes]
rs59889668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71522600	1.00[AMR][1000 genomes]
rs71522601	1.00[AMR][1000 genomes]
rs71522602	1.00[AMR][1000 genomes]
rs71524503	1.00[AMR][1000 genomes]
rs71524504	1.00[AMR][1000 genomes]
rs71524505	1.00[AMR][1000 genomes]
rs71524513	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465434	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1020360	chr8:132068287-132195108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1030858	chr8:132070866-132195108	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv6399	chr8:132122137-132167508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:132148400-132153800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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