Variant report

Variant	rs16905597
Chromosome Location	chr9:22068074-22068075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22061074..22062734-chr9:22066140..22068609,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16935753	0.86[YRI][hapmap]
rs1759417	1.00[CHD][hapmap]
rs2151279	0.87[AFR][1000 genomes]
rs3217980	1.00[TSI][hapmap];0.86[YRI][hapmap]
rs3217994	1.00[TSI][hapmap];0.86[YRI][hapmap]
rs3217997	0.86[YRI][hapmap]
rs3217999	0.86[YRI][hapmap]
rs3218003	1.00[TSI][hapmap];0.86[YRI][hapmap]
rs3218022	1.00[TSI][hapmap]
rs3218023	0.86[YRI][hapmap]
rs3731194	1.00[TSI][hapmap]
rs3731213	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs41386451	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56272822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61564778	0.87[AFR][1000 genomes]
rs73650003	0.82[AFR][1000 genomes]
rs73650008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652824	0.85[AFR][1000 genomes]
rs73652846	0.87[AFR][1000 genomes]
rs73652847	0.87[AFR][1000 genomes]
rs73652848	0.87[AFR][1000 genomes]
rs73652849	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv892747	chr9:21984661-22068646	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22053800-22069000	Weak transcription	Hela-S3	cervix
2	chr9:22053800-22079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22055600-22079800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:22066600-22068200	Weak transcription	Dnd41	blood
5	chr9:22066600-22071800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:22066600-22072000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:22066600-22072000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:22066600-22072000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:22067400-22073400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr9:22067600-22068200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:22067600-22073400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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