Variant report

Variant	rs16905917
Chromosome Location	chr9:22342768-22342769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:22342552..22344579-chr9:22390946..22393020,2	MCF-7	breast:
2	chr9:22341545..22344630-chr9:22445904..22448920,6	MCF-7	breast:
3	chr9:22340256..22342869-chr9:22344795..22348562,3	MCF-7	breast:
4	chr9:22341942..22344715-chr9:22446110..22447985,2	MCF-7	breast:
5	chr9:22332925..22335783-chr9:22341287..22343455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176399	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10811689	1.00[JPT][hapmap]
rs10965295	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs11999022	1.00[AMR][1000 genomes]
rs12000924	1.00[AMR][1000 genomes]
rs12002923	1.00[AMR][1000 genomes]
rs12002955	1.00[AMR][1000 genomes]
rs12003870	1.00[AMR][1000 genomes]
rs12004312	1.00[AMR][1000 genomes]
rs1575974	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16905769	1.00[CHB][hapmap]
rs34549940	1.00[AMR][1000 genomes]
rs4246845	1.00[JPT][hapmap]
rs4256664	1.00[JPT][hapmap]
rs4416908	1.00[AMR][1000 genomes]
rs61432080	1.00[AMR][1000 genomes]
rs6475627	1.00[JPT][hapmap]
rs7037085	1.00[JPT][hapmap]
rs7041931	1.00[AMR][1000 genomes]
rs7046467	1.00[AMR][1000 genomes]
rs7853527	1.00[MEX][hapmap]
rs7859182	1.00[AMR][1000 genomes]
rs7859353	1.00[CHB][hapmap]
rs7859407	1.00[CHB][hapmap]
rs7872061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1029289	chr9:22193167-23023688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016067	chr9:22210874-22432654	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1015364	chr9:22211364-22416886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv540086	chr9:22211364-22416886	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1023972	chr9:22246764-22426267	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv540087	chr9:22246764-22426267	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22341600-22344400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:22341800-22343200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22342000-22343400	Enhancers	A549	lung
4	chr9:22342000-22343400	Enhancers	NH-A	brain
5	chr9:22342000-22343600	Enhancers	HSMM	muscle
6	chr9:22342000-22343600	Enhancers	HSMMtube	muscle
7	chr9:22342400-22342800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:22342400-22342800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:22342400-22342800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:22342400-22342800	Enhancers	Osteobl	bone
11	chr9:22342400-22343000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:22342400-22343000	Enhancers	Hela-S3	cervix
13	chr9:22342400-22343000	Enhancers	HUVEC	blood vessel
14	chr9:22342400-22343000	Enhancers	NHEK	skin
15	chr9:22342400-22343200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:22342400-22343200	Enhancers	Liver	Liver
17	chr9:22342400-22343200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:22342400-22343200	Enhancers	HMEC	breast
19	chr9:22342400-22343400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:22342400-22343400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:22342400-22343400	Enhancers	Adipose Nuclei	Adipose
22	chr9:22342600-22342800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:22342600-22343000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:22342600-22343000	Enhancers	Rectal Smooth Muscle	rectum
25	chr9:22342600-22343400	Enhancers	Colon Smooth Muscle	Colon

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