Variant report

Variant	rs16907201
Chromosome Location	chr9:93927913-93927914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr9:93926751-93928007	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93925937..93928694-chr9:93929263..93930802,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237422	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12342181	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12351170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972090	1.00[CHB][hapmap]
rs35120362	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35305977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743819	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744034	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744038	0.93[CEU][hapmap]
rs55889534	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57081485	0.95[ASN][1000 genomes]
rs57561531	0.90[ASN][1000 genomes]
rs58475797	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61641572	0.95[ASN][1000 genomes]
rs7039408	0.95[ASN][1000 genomes]
rs7040496	0.95[ASN][1000 genomes]
rs73650957	0.95[ASN][1000 genomes]
rs73650959	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16907201	ANKRD19	cis	parietal	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93920200-93928000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:93920600-93930000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr9:93922400-93928800	Enhancers	Fetal Muscle Leg	muscle
4	chr9:93922600-93928600	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:93922600-93928600	Enhancers	Fetal Thymus	thymus
6	chr9:93922600-93929000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:93923200-93929000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:93923400-93928000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:93923600-93928400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:93923600-93928800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:93923600-93929600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:93923800-93928000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:93923800-93928000	Enhancers	HMEC	breast
14	chr9:93923800-93929600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:93924000-93928000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:93924000-93929400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:93924000-93929400	Enhancers	NHLF	lung
18	chr9:93924200-93929400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:93924200-93929600	Enhancers	Placenta	Placenta
20	chr9:93924200-93929800	Enhancers	NH-A	brain
21	chr9:93924400-93928600	Enhancers	Primary B cells from peripheral blood	blood
22	chr9:93924400-93929800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:93924400-93929800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:93924600-93928000	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:93924600-93929800	Enhancers	Fetal Intestine Large	intestine
26	chr9:93924800-93928600	Enhancers	HepG2	liver
27	chr9:93924800-93929400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr9:93925000-93928600	Enhancers	Small Intestine	intestine
29	chr9:93925000-93928800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr9:93925200-93929400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:93925400-93929200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:93925600-93928000	Weak transcription	Fetal Stomach	stomach
33	chr9:93925600-93928400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:93925600-93929200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:93925600-93929200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:93925800-93929800	Enhancers	Fetal Intestine Small	intestine
37	chr9:93926000-93928800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr9:93926000-93928800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:93926000-93928800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:93926200-93928000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:93926200-93928400	Weak transcription	Fetal Lung	lung
42	chr9:93926600-93928800	Enhancers	Stomach Mucosa	stomach
43	chr9:93926800-93928600	Enhancers	Colonic Mucosa	Colon
44	chr9:93927000-93928000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr9:93927000-93929200	Enhancers	NHEK	skin
46	chr9:93927200-93929200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:93927400-93928400	Weak transcription	Primary B cells from cord blood	blood
48	chr9:93927400-93928600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:93927400-93928600	Enhancers	K562	blood
50	chr9:93927600-93928400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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