Variant report

Variant	rs16907351
Chromosome Location	chr9:116398648-116398649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116398646..116400904-chr9:116412622..116414433,2	MCF-7	breast:
2	chr9:116392305..116395161-chr9:116397306..116400059,2	MCF-7	breast:
3	chr9:116382976..116384778-chr9:116398456..116400066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227482	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16907365	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59145814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61014328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2560176	chr9:116397318-116399163	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2299262	chr9:116397488-116398704	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116385800-116402600	Weak transcription	Stomach Mucosa	stomach
2	chr9:116389800-116402800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:116392600-116399000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116393400-116399400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:116393600-116399000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:116393800-116398800	Enhancers	Fetal Stomach	stomach
7	chr9:116394600-116399000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:116395200-116398800	Enhancers	Fetal Lung	lung
9	chr9:116396000-116398800	Enhancers	Psoas Muscle	Psoas
10	chr9:116396000-116399200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:116396200-116398800	Enhancers	Right Atrium	heart
12	chr9:116396200-116398800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:116396200-116399000	Enhancers	Adipose Nuclei	Adipose
14	chr9:116396200-116399000	Enhancers	HSMM	muscle
15	chr9:116396200-116399400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:116396200-116399400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:116396400-116398800	Enhancers	Left Ventricle	heart
18	chr9:116396800-116398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:116397000-116399600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:116397200-116398800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:116397200-116400400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:116397200-116401200	Weak transcription	Spleen	Spleen
23	chr9:116397600-116403000	Weak transcription	Fetal Heart	heart
24	chr9:116397800-116400800	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:116398000-116398800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:116398000-116399000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:116398000-116399000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:116398200-116398800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:116398200-116399000	Flanking Active TSS	HepG2	liver
30	chr9:116398400-116398800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
31	chr9:116398400-116398800	Flanking Active TSS	Osteobl	bone
32	chr9:116398400-116399000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:116398400-116399000	Enhancers	NHLF	lung
34	chr9:116398600-116398800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:116398600-116398800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:116398600-116398800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr9:116398600-116399000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

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