Variant report

Variant	rs16907657
Chromosome Location	chr9:116419786-116419787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1077072	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs10981866	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs16907724	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2101069	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2622266	0.82[JPT][hapmap]
rs7854061	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv466512	chr9:116413751-116446881	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv615220	chr9:116413751-116446881	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3326886	chr9:116417931-116422229	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116411600-116420000	Weak transcription	Fetal Brain Female	brain
2	chr9:116412800-116420000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:116413400-116419800	Weak transcription	Fetal Kidney	kidney
4	chr9:116413400-116420000	Weak transcription	Gastric	stomach
5	chr9:116414000-116420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:116415400-116420200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:116415800-116421000	Enhancers	Fetal Muscle Leg	muscle
8	chr9:116416200-116422200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:116416600-116420800	Enhancers	Spleen	Spleen
10	chr9:116417600-116420600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:116417800-116419800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:116417800-116419800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:116417800-116419800	Weak transcription	Brain Anterior Caudate	brain
14	chr9:116417800-116419800	Weak transcription	HSMM	muscle
15	chr9:116417800-116419800	Weak transcription	HSMMtube	muscle
16	chr9:116417800-116419800	Weak transcription	NHLF	lung
17	chr9:116417800-116420000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:116417800-116420000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:116417800-116420000	Weak transcription	Brain Angular Gyrus	brain
20	chr9:116417800-116420000	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:116417800-116420000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:116417800-116420000	Weak transcription	Brain Substantia Nigra	brain
23	chr9:116417800-116420000	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:116417800-116420000	Weak transcription	NHDF-Ad	bronchial
25	chr9:116417800-116420200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:116417800-116420200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:116417800-116420200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:116417800-116420200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:116417800-116420200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:116417800-116420200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr9:116417800-116420200	Weak transcription	HMEC	breast
32	chr9:116417800-116420200	Weak transcription	NH-A	brain
33	chr9:116417800-116420200	Weak transcription	Osteobl	bone
34	chr9:116417800-116420400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:116417800-116420400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:116417800-116420600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:116417800-116420600	Weak transcription	A549	lung
38	chr9:116417800-116420800	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr9:116417800-116421200	Enhancers	HUVEC	blood vessel
40	chr9:116418000-116420000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:116418000-116420000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:116418000-116420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:116418200-116420000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:116418200-116420000	Weak transcription	Pancreas	Pancrea
45	chr9:116418600-116420000	Enhancers	Lung	lung
46	chr9:116418800-116420600	Enhancers	Fetal Stomach	stomach
47	chr9:116418800-116421000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:116418800-116421200	Enhancers	Placenta	Placenta
49	chr9:116418800-116421800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:116419000-116420000	Flanking Active TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links