Variant report

Variant	rs16907720
Chromosome Location	chr9:94499797-94499798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94497499..94499840-chr9:94505365..94508110,2	MCF-7	breast:
2	chr9:94497979..94500430-chr9:94500591..94503129,2	K562	blood:
3	chr9:94493263..94495550-chr9:94497375..94499893,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs7031600	0.94[EUR][1000 genomes]
rs72744454	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72744464	0.94[EUR][1000 genomes]
rs72744465	0.94[EUR][1000 genomes]
rs72744467	0.94[EUR][1000 genomes]
rs72744472	0.87[EUR][1000 genomes]
rs72744473	0.80[EUR][1000 genomes]
rs72744474	0.83[EUR][1000 genomes]
rs72744477	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv932872	chr9:94499505-94499830	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
2	chr9:94483400-94501600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:94483600-94504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:94483600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:94486200-94521000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:94486800-94517400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:94487000-94502200	Weak transcription	Esophagus	oesophagus
8	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:94489000-94508800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:94490400-94521000	Weak transcription	Right Atrium	heart
11	chr9:94491600-94501000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:94493200-94517400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:94495000-94501800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:94496400-94499800	Strong transcription	K562	blood
15	chr9:94496600-94499800	Strong transcription	Fetal Lung	lung
16	chr9:94497200-94502400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:94497200-94502400	Weak transcription	Spleen	Spleen
18	chr9:94497200-94502600	Strong transcription	Fetal Stomach	stomach
19	chr9:94497400-94503000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:94497600-94499800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr9:94497600-94503000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:94498200-94499800	Strong transcription	Fetal Intestine Small	intestine
23	chr9:94498200-94499800	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr9:94498400-94499800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:94498400-94499800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:94498400-94499800	Genic enhancers	Colon Smooth Muscle	Colon
27	chr9:94498400-94499800	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:94498400-94499800	Strong transcription	Fetal Muscle Leg	muscle
29	chr9:94498400-94499800	Strong transcription	Gastric	stomach
30	chr9:94498400-94499800	Strong transcription	Ovary	ovary
31	chr9:94498400-94500400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:94499400-94509400	Weak transcription	Fetal Intestine Large	intestine
33	chr9:94499600-94500400	Enhancers	Rectal Smooth Muscle	rectum
34	chr9:94499600-94517200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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