Variant report

Variant	rs16907852
Chromosome Location	chr11:10503756-10503757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10503529..10506582-chr11:10512357..10516600,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3891547	0.93[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56975454	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7123414	0.93[GIH][hapmap]
rs7124537	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73409951	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73409954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73409956	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73409984	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
3	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:10484200-10509600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
6	chr11:10485000-10515200	Weak transcription	Liver	Liver
7	chr11:10485600-10508200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:10485800-10511600	Weak transcription	Osteobl	bone
9	chr11:10486000-10504800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:10486800-10509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:10487200-10506200	Weak transcription	Dnd41	blood
13	chr11:10489000-10512600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:10494200-10510000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:10494600-10509600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:10495000-10509600	Strong transcription	Primary B cells from cord blood	blood
17	chr11:10495000-10528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:10495200-10510800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
20	chr11:10495400-10509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:10495400-10511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:10495600-10510600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:10495600-10516400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:10496200-10509800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:10496400-10505800	Weak transcription	Placenta	Placenta
27	chr11:10496400-10524000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr11:10496600-10505200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:10496600-10507200	Strong transcription	Fetal Thymus	thymus
30	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:10497800-10503800	Enhancers	Brain Anterior Caudate	brain
32	chr11:10498400-10508400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:10498600-10511600	Weak transcription	Ovary	ovary
34	chr11:10498600-10514400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:10498800-10508600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:10498800-10522000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:10498800-10522200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:10499000-10509400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:10499000-10509800	Weak transcription	GM12878-XiMat	blood
40	chr11:10499000-10514600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:10499200-10511600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:10499200-10513000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:10499800-10504600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:10499800-10509200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:10499800-10523600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:10500000-10510200	Strong transcription	Thymus	Thymus
47	chr11:10500000-10512400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:10500200-10504000	Strong transcription	NHLF	lung
49	chr11:10500400-10503800	Strong transcription	Gastric	stomach
50	chr11:10500400-10507200	Weak transcription	Fetal Muscle Trunk	muscle

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