Variant report

Variant	rs16908804
Chromosome Location	chr10:58113530-58113531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:58105178..58108423-chr10:58112062..58115717,5	K562	blood:
2	chr10:58101451..58103275-chr10:58112596..58114444,2	K562	blood:
3	chr10:57717449..57719826-chr10:58113141..58115181,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11005328	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs11005329	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11005331	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11005339	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16908662	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16908699	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16908887	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2893686	0.96[ASN][1000 genomes]
rs4281417	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7086907	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7098709	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895638	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8181328	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831883	chr10:57947759-58139056	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv895503	chr10:58029209-58201703	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895504	chr10:58029209-58230622	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1035842	chr10:58084841-58150135	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58107200-58117600	Weak transcription	NHEK	skin
2	chr10:58107200-58117800	Weak transcription	HUVEC	blood vessel
3	chr10:58107400-58117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:58110200-58115600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:58110400-58117400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:58110600-58117600	Weak transcription	Fetal Intestine Small	intestine
7	chr10:58110600-58117800	Weak transcription	Fetal Stomach	stomach
8	chr10:58110600-58118000	Weak transcription	Thymus	Thymus
9	chr10:58110600-58119600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:58110600-58120000	Weak transcription	Pancreas	Pancrea
11	chr10:58110800-58117400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:58110800-58117600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:58111800-58113600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:58111800-58119400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:58112000-58115000	Weak transcription	Dnd41	blood
16	chr10:58112000-58117800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:58112200-58117200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:58112200-58117400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:58112200-58117800	Weak transcription	HMEC	breast
20	chr10:58112200-58120000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:58112400-58117400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:58112400-58117600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:58112400-58117600	Weak transcription	Fetal Thymus	thymus
24	chr10:58112600-58119800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:58112600-58119800	Weak transcription	NHDF-Ad	bronchial
26	chr10:58113000-58116000	Strong transcription	A549	lung
27	chr10:58113000-58117200	Weak transcription	K562	blood
28	chr10:58113000-58119400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:58113000-58119600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:58113200-58114000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:58113200-58116400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:58113200-58117200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:58113400-58117600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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