Variant report

Variant	rs16909443
Chromosome Location	chr11:6192462-6192463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:6192419-6192469	NT2-D1	testis:	n/a
2	chr11:6192419-6192469	BE2_C	brain:	n/a
3	chr11:6192419-6192469	H1-hESC	embryonic stem cell:	embryo
4	chr11:6192419-6192469	Hela-S3	cervix:	n/a
5	chr11:6192419-6192469	U87	brain:	n/a
6	chr11:6192419-6192469	AG09309	skin:	n/a
7	chr11:6192419-6192469	HCPEpiC	choroid plexus:	n/a
8	chr11:6192419-6192469	RPTEC	kidney:	n/a
9	chr11:6192419-6192469	AG04450	lung:	fetal
10	chr11:6192419-6192469	HCM	heart:	n/a
11	chr11:6192419-6192469	Jurkat	blood:	n/a
12	chr11:6192419-6192469	PFSK-1	brain:	n/a
13	chr11:6192419-6192469	HRCEpiC	kidney:	n/a
14	chr11:6192419-6192469	HRE	kidney:	n/a
15	chr11:6192419-6192469	Caco-2	colon:	n/a
16	chr11:6192419-6192469	HAEpiC	amniotic membrane:	n/a
17	chr11:6192419-6192469	NHBE	bronchial:	n/a
18	chr11:6192419-6192469	HPAEpiC	pulmonary alveolar:	n/a
19	chr11:6192419-6192469	ProgFib	skin:	n/a
20	chr11:6192419-6192469	HMEC	breast:	n/a
21	chr11:6192419-6192469	BJ	skin:	n/a
22	chr11:6192419-6192469	HUVEC	blood vessel:	n/a
23	chr11:6192419-6192469	ovcar-3	ovarian:	n/a
24	chr11:6192419-6192469	HRPEpiC	eye:	n/a
25	chr11:6192419-6192469	HEEpiC	esophagus:	n/a
26	chr11:6192419-6192469	SK-N-MC	brain:	n/a
27	chr11:6192419-6192469	AG04449	skin:	fetal
28	chr11:6192419-6192469	MCF10A-Er-Src	breast:	n/a
29	chr11:6192419-6192469	GM06990	blood:	n/a
30	chr11:6192419-6192469	ECC-1	luminal epithelium:	n/a
31	chr11:6192419-6192469	GM12892	blood:	n/a
32	chr11:6192419-6192469	GM12891	blood:	n/a
33	chr11:6192419-6192469	K562	blood:	n/a
34	chr11:6192419-6192469	HNPCEpiC	eye:	n/a
35	chr11:6192419-6192469	HL-60	blood:	n/a
36	chr11:6192419-6192469	GM19239	blood:	n/a
37	chr11:6192419-6192469	MCF-7	breast:	n/a
38	chr11:6192419-6192469	AG09319	gingival:	n/a
39	chr11:6192419-6192469	SK-N-SH	brain:	n/a
40	chr11:6192419-6192469	AoSMC	blood vessel:	n/a
41	chr11:6192419-6192469	SAEC	small airway:	n/a
42	chr11:6192419-6192469	A549	lung:	n/a
43	chr11:6192419-6192469	GM12878	blood:	n/a
44	chr11:6192419-6192469	HIPEpiC	eye:	n/a
45	chr11:6192419-6192469	SK-N-SH_RA	brain:	n/a
46	chr11:6192419-6192469	IMR90	lung:	fetal
47	chr11:6192419-6192469	HepG2	liver:	n/a
48	chr11:6192419-6192469	PANC-1	pancreas:	n/a
49	chr11:6192419-6192469	HCF	heart:	n/a
50	chr11:6192419-6192469	NHDF-neo	bronchial:	n/a

No data

Variant related genes	Relation type
OR52B2	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv896970	chr11:6173000-6217152	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv523933	chr11:6173346-6204316	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3485916	chr11:6188476-6194474	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3505492	chr11:6189026-6194824	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3505493	chr11:6189026-6194824	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3485915	chr11:6189534-6193177	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3468397	chr11:6189573-6193106	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3485920	chr11:6189588-6193087	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3485917	chr11:6189607-6193051	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3468408	chr11:6189674-6193005	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3485918	chr11:6189681-6193010	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3468419	chr11:6189688-6193003	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3485921	chr11:6189688-6193003	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv16796	chr11:6189710-6193096	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv2421684	chr11:6189803-6192462	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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