Variant report

Variant	rs16910448
Chromosome Location	chr9:26437484-26437485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10118730	1.00[EUR][1000 genomes]
rs10118861	1.00[EUR][1000 genomes]
rs10125924	1.00[EUR][1000 genomes]
rs1117679	1.00[EUR][1000 genomes]
rs1117680	1.00[EUR][1000 genomes]
rs12336769	1.00[EUR][1000 genomes]
rs12337751	1.00[EUR][1000 genomes]
rs12353461	1.00[EUR][1000 genomes]
rs1548282	1.00[EUR][1000 genomes]
rs16910504	1.00[EUR][1000 genomes]
rs28451412	1.00[EUR][1000 genomes]
rs28816460	1.00[EUR][1000 genomes]
rs60718906	0.81[AFR][1000 genomes]
rs7024626	0.87[AMR][1000 genomes]
rs73642945	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73642946	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7874434	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892853	chr9:26326100-26457404	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv892855	chr9:26333942-26546080	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv831531	chr9:26334440-26475736	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv892856	chr9:26423082-26463378	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26434000-26438200	Enhancers	Brain Anterior Caudate	brain
2	chr9:26434600-26438600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:26435000-26438400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:26435800-26437800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr9:26436800-26437600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:26436800-26437600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:26436800-26437600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:26436800-26437600	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr9:26436800-26437800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:26436800-26438400	Enhancers	Brain Angular Gyrus	brain
11	chr9:26436800-26438400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:26437000-26437600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:26437000-26437600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:26437200-26437600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:26437400-26439000	Enhancers	Brain Hippocampus Middle	brain
16	chr9:26437400-26439000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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