Variant report

Variant	rs16911681
Chromosome Location	chr9:97522829-97522830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12337706	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
2	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:97506400-97526000	Weak transcription	Small Intestine	intestine
4	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
5	chr9:97512600-97523200	Weak transcription	Fetal Brain Female	brain
6	chr9:97512600-97530400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr9:97512600-97540800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr9:97512600-97544600	Weak transcription	Psoas Muscle	Psoas
9	chr9:97519000-97523000	Enhancers	Brain Angular Gyrus	brain
10	chr9:97519000-97523000	Enhancers	Brain Substantia Nigra	brain
11	chr9:97519800-97531200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:97519800-97544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:97520400-97525800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr9:97520400-97531800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:97520600-97529600	Weak transcription	NH-A	brain
16	chr9:97520600-97530600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:97520800-97523000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:97520800-97531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:97521200-97523800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:97521200-97525000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:97521400-97527400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:97521600-97523200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:97521600-97523400	Strong transcription	Rectal Smooth Muscle	rectum
24	chr9:97521600-97523600	Strong transcription	Fetal Stomach	stomach
25	chr9:97521600-97524000	Strong transcription	Fetal Thymus	thymus
26	chr9:97521600-97524200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:97521800-97523400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:97521800-97523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:97521800-97523400	Strong transcription	Osteobl	bone
30	chr9:97521800-97523600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr9:97521800-97524000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:97521800-97524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:97521800-97541200	Weak transcription	Right Ventricle	heart
34	chr9:97522000-97523000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:97522000-97523200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:97522000-97523400	Strong transcription	Primary B cells from cord blood	blood
37	chr9:97522000-97523400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:97522000-97523400	Strong transcription	Lung	lung
39	chr9:97522000-97523400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr9:97522000-97523400	Strong transcription	Dnd41	blood
41	chr9:97522000-97523600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:97522000-97523600	Strong transcription	Primary B cells from peripheral blood	blood
43	chr9:97522000-97523600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:97522000-97523600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:97522000-97523600	Strong transcription	Fetal Intestine Small	intestine
46	chr9:97522000-97523600	Strong transcription	Placenta	Placenta
47	chr9:97522000-97523600	Strong transcription	Stomach Smooth Muscle	stomach
48	chr9:97522000-97523600	Strong transcription	Thymus	Thymus
49	chr9:97522000-97523800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:97522000-97523800	Strong transcription	Fetal Muscle Trunk	muscle

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