Variant report

Variant	rs16911852
Chromosome Location	chr9:97700681-97700682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97692662..97694714-chr9:97698664..97701164,2	K562	blood:
2	chr9:97698588..97700870-chr9:97766363..97768759,3	MCF-7	breast:
3	chr9:97692662..97695864-chr9:97697611..97701164,3	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12340679	0.83[YRI][hapmap]
rs1800367	1.00[YRI][hapmap]
rs4647548	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
7	chr9:97689800-97702600	Weak transcription	Fetal Intestine Large	intestine
8	chr9:97691400-97703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
11	chr9:97692400-97707600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:97693200-97703000	Weak transcription	Pancreas	Pancrea
13	chr9:97693400-97712600	Weak transcription	Gastric	stomach
14	chr9:97695200-97701000	Genic enhancers	HSMMtube	muscle
15	chr9:97695600-97702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:97695600-97703000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:97695600-97703000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:97695600-97709000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:97697400-97701000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:97697400-97701000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:97697800-97701000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:97697800-97703000	Weak transcription	Spleen	Spleen
23	chr9:97698200-97700800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:97698400-97701000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:97698400-97701000	Enhancers	NHLF	lung
26	chr9:97698400-97702600	Weak transcription	Fetal Intestine Small	intestine
27	chr9:97698600-97701000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:97698600-97701000	Enhancers	Psoas Muscle	Psoas
29	chr9:97698600-97701000	Enhancers	NHDF-Ad	bronchial
30	chr9:97698800-97701000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:97698800-97701000	Enhancers	Hela-S3	cervix
32	chr9:97698800-97701200	Enhancers	K562	blood
33	chr9:97699000-97703000	Weak transcription	Adipose Nuclei	Adipose
34	chr9:97699200-97700800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:97699200-97701000	Enhancers	Lung	lung
36	chr9:97699200-97703200	Weak transcription	Fetal Kidney	kidney
37	chr9:97699400-97701000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr9:97699400-97701000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr9:97699400-97701200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr9:97699400-97701600	Weak transcription	Fetal Muscle Leg	muscle
41	chr9:97699600-97701000	Enhancers	H9 Cell Line	embryonic stem cell
42	chr9:97699600-97701000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr9:97699600-97703600	Weak transcription	Fetal Lung	lung
44	chr9:97699800-97701000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:97699800-97701200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr9:97699800-97702400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr9:97699800-97702600	Weak transcription	Right Atrium	heart
48	chr9:97699800-97703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:97699800-97703000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:97699800-97703000	Weak transcription	Colonic Mucosa	Colon

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