Variant report

Variant	rs16911899
Chromosome Location	chr9:97759394-97759395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97391705..97394418-chr9:97757936..97760772,2	MCF-7	breast:
2	chr9:97757677..97760914-chr9:97764388..97768394,5	K562	blood:
3	chr9:97674046..97692471-chr9:97747275..97760115,80	MCF-7	breast:
4	chr9:97758403..97762885-chr9:97763631..97766514,4	K562	blood:
5	chr9:97543420..97548041-chr9:97751061..97760906,16	MCF-7	breast:
6	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1004813	1.00[AMR][1000 genomes]
rs10512251	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12684072	1.00[AMR][1000 genomes]
rs12684777	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12685442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12686500	0.81[AFR][1000 genomes]
rs1543848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16911870	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28374530	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55795857	1.00[AMR][1000 genomes]
rs55932459	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7024881	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043275	1.00[AMR][1000 genomes]
rs7046628	1.00[AMR][1000 genomes]
rs72750306	1.00[AMR][1000 genomes]
rs72750343	1.00[AMR][1000 genomes]
rs72750345	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750349	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750355	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72750368	0.81[AFR][1000 genomes]
rs72750381	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97736600-97766200	Weak transcription	Right Ventricle	heart
3	chr9:97742600-97763200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:97744200-97763200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:97746000-97762000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:97748600-97761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:97750000-97762200	Weak transcription	Thymus	Thymus
8	chr9:97752800-97762200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:97754400-97759600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:97754600-97762400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:97755200-97766400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:97756200-97765000	Weak transcription	Fetal Intestine Large	intestine
13	chr9:97756200-97765000	Weak transcription	Fetal Intestine Small	intestine
14	chr9:97756400-97759600	Enhancers	Ovary	ovary
15	chr9:97757000-97759400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:97757200-97759400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr9:97757200-97759400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:97757200-97759400	Enhancers	HSMMtube	muscle
19	chr9:97757200-97759400	Enhancers	NH-A	brain
20	chr9:97757200-97759800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:97757400-97759400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr9:97757400-97759400	Enhancers	Fetal Stomach	stomach
23	chr9:97757400-97759400	Enhancers	Stomach Mucosa	stomach
24	chr9:97757400-97759600	Enhancers	Colon Smooth Muscle	Colon
25	chr9:97757600-97759400	Enhancers	Brain Cingulate Gyrus	brain
26	chr9:97757600-97759400	Enhancers	Brain Substantia Nigra	brain
27	chr9:97757600-97759400	Enhancers	Pancreas	Pancrea
28	chr9:97757600-97759400	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:97757600-97759600	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:97757600-97759800	Enhancers	HUVEC	blood vessel
31	chr9:97758000-97759600	Enhancers	Fetal Heart	heart
32	chr9:97758200-97759400	Enhancers	HepG2	liver
33	chr9:97758400-97763200	Enhancers	Liver	Liver
34	chr9:97758400-97763200	Weak transcription	HSMM	muscle
35	chr9:97758400-97764200	Weak transcription	Small Intestine	intestine
36	chr9:97758400-97765000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr9:97758400-97766000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:97758400-97766400	Weak transcription	Gastric	stomach
39	chr9:97758600-97762000	Weak transcription	Fetal Lung	lung
40	chr9:97758600-97763200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:97758600-97765000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:97758600-97766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:97758800-97759400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:97758800-97759400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr9:97758800-97763200	Weak transcription	Psoas Muscle	Psoas
46	chr9:97758800-97764600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:97759000-97761600	Weak transcription	Placenta	Placenta
48	chr9:97759000-97761800	Weak transcription	Aorta	Aorta
49	chr9:97759000-97762000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr9:97759000-97762000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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