Variant report

Variant	rs16912093
Chromosome Location	chr9:98111370-98111371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98110078..98112220-chr9:98115357..98117832,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12000012	0.81[EUR][1000 genomes]
rs16912035	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs2296577	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98111000-98111400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:98111000-98112400	Bivalent Enhancer	Fetal Brain Male	brain
3	chr9:98111000-98112800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:98111200-98111400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:98111200-98111400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr9:98111200-98111400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr9:98111200-98111400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:98111200-98111400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:98111200-98111400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:98111200-98111400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:98111200-98111400	Enhancers	Brain Anterior Caudate	brain
12	chr9:98111200-98111400	Active TSS	Colonic Mucosa	Colon
13	chr9:98111200-98111400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr9:98111200-98111400	Bivalent/Poised TSS	Fetal Brain Female	brain
15	chr9:98111200-98111400	Bivalent Enhancer	Fetal Intestine Small	intestine
16	chr9:98111200-98111400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr9:98111200-98111400	Bivalent Enhancer	Fetal Stomach	stomach
18	chr9:98111200-98111400	Active TSS	Ovary	ovary
19	chr9:98111200-98111400	Enhancers	Pancreas	Pancrea
20	chr9:98111200-98111400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr9:98111200-98111400	Bivalent/Poised TSS	HUVEC	blood vessel
22	chr9:98111200-98111400	Bivalent/Poised TSS	NH-A	brain
23	chr9:98111200-98111400	Bivalent Enhancer	NHEK	skin
24	chr9:98111200-98111600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr9:98111200-98111600	Bivalent Enhancer	Small Intestine	intestine
26	chr9:98111200-98112000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:98111200-98112200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:98111200-98112200	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr9:98111200-98112400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr9:98111200-98112400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:98111200-98112600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
32	chr9:98111200-98112600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
33	chr9:98111200-98112600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr9:98111200-98112600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr9:98111200-98112600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr9:98111200-98112800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links