Variant report

Variant	rs16912127
Chromosome Location	chr9:98143742-98143743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98143391..98145601-chr9:98149579..98151738,2	MCF-7	breast:
2	chr9:98134922..98136440-chr9:98143391..98144942,2	MCF-7	breast:
3	chr9:98143050..98145894-chr9:98187631..98190723,5	MCF-7	breast:
4	chr9:98142213..98143971-chr9:98267727..98270649,2	MCF-7	breast:
5	chr9:98077971..98080393-chr9:98142983..98145704,5	MCF-7	breast:
6	chr9:98134626..98137202-chr9:98143503..98145569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237857	Chromatin interaction
ENSG00000185920	Chromatin interaction
ENSG00000158169	Chromatin interaction
ENSG00000271155	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12685109	0.93[ASN][1000 genomes]
rs16912126	1.00[ASN][1000 genomes]
rs16912143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98139400-98147600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98142400-98144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:98143000-98146800	Enhancers	NHLF	lung
4	chr9:98143200-98143800	Flanking Active TSS	A549	lung
5	chr9:98143200-98143800	Enhancers	Osteobl	bone
6	chr9:98143200-98144000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:98143200-98144200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:98143200-98144200	Enhancers	K562	blood
9	chr9:98143200-98146600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:98143200-98146800	Enhancers	HMEC	breast
11	chr9:98143200-98146800	Enhancers	NH-A	brain
12	chr9:98143400-98143800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:98143400-98144000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:98143400-98144000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:98143400-98144000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:98143400-98144000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
17	chr9:98143400-98144000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:98143400-98144000	Enhancers	Adipose Nuclei	Adipose
19	chr9:98143400-98144000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:98143400-98144000	Flanking Active TSS	Hela-S3	cervix
21	chr9:98143400-98144000	Enhancers	HSMM	muscle
22	chr9:98143400-98144000	Enhancers	HSMMtube	muscle
23	chr9:98143400-98146800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:98143600-98146000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:98143600-98146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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