Variant report

Variant	rs16912550
Chromosome Location	chr8:85131243-85131244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85124259..85125882-chr8:85131139..85133298,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10096464	0.90[ASN][1000 genomes]
rs10099399	0.92[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10100325	0.87[ASN][1000 genomes]
rs10103144	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10108228	0.88[ASN][1000 genomes]
rs10111724	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10111779	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10112043	0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs10112056	0.90[ASN][1000 genomes]
rs10112178	0.87[ASN][1000 genomes]
rs10113234	0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10113425	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10504796	0.83[JPT][hapmap];0.91[YRI][hapmap]
rs10504797	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10504798	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10958213	0.87[ASN][1000 genomes]
rs11780481	0.87[ASN][1000 genomes]
rs11787298	0.87[ASN][1000 genomes]
rs12375297	0.92[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12375329	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12375330	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12375429	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs13263706	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1437515	0.90[ASN][1000 genomes]
rs16912522	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs16912524	0.82[ASN][1000 genomes]
rs17708185	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs17708369	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1978828	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs2196615	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2196616	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2217977	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2217978	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs35196647	0.90[ASN][1000 genomes]
rs3891539	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs55695735	0.87[ASN][1000 genomes]
rs62529180	0.90[ASN][1000 genomes]
rs6473531	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs766560	0.85[ASN][1000 genomes]
rs766561	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7818732	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7828432	0.83[JPT][hapmap]
rs7841226	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7845564	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9298421	0.90[ASN][1000 genomes]
rs9298422	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs959433	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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