Variant report

Variant	rs16912625
Chromosome Location	chr8:85178200-85178201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1491554	0.95[AFR][1000 genomes]
rs1491557	0.95[AFR][1000 genomes]
rs1491558	0.95[AFR][1000 genomes]
rs1491559	0.95[AFR][1000 genomes]
rs16912592	0.95[AFR][1000 genomes]
rs16912612	0.95[AFR][1000 genomes]
rs16912639	1.00[AFR][1000 genomes]
rs16912687	0.84[AFR][1000 genomes]
rs16912700	0.84[AFR][1000 genomes]
rs2201093	1.00[AFR][1000 genomes]
rs7012895	0.95[AFR][1000 genomes]
rs7826269	0.86[AFR][1000 genomes]
rs7826313	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85170000-85178400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:85177600-85178400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:85178000-85178800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:85178000-85179800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:85178000-85180400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:85178200-85178800	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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