Variant report

Variant	rs16915482
Chromosome Location	chr11:26353437-26353438
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr11:26353427-26353802	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr11:26353387-26353825	H1-hESC	embryonic stem cell:	n/a	chr11:26353696-26353704
3	CTCF	chr11:26353378-26353758	H1-hESC	embryonic stem cell:	n/a	chr11:26353696-26353704
4	CTCF	chr11:26353380-26353530	RPTEC	kidney:	n/a	n/a
5	RAD21	chr11:26353426-26353837	SK-N-SH_RA	brain:	n/a	n/a
6	CTCF	chr11:26353360-26353510	A549	lung:	n/a	n/a
7	CTCF	chr11:26353420-26353570	HCM	heart:	n/a	n/a
8	RAD21	chr11:26353378-26353907	SK-N-SH_RA	brain:	n/a	n/a
9	ZBTB7A	chr11:26353343-26353804	ECC-1	luminal epithelium:	n/a	n/a
10	RAD21	chr11:26353305-26353967	H1-hESC	embryonic stem cell:	n/a	n/a
11	TAF1	chr11:26353432-26353961	PFSK-1	brain:	n/a	n/a
12	BACH1	chr11:26353420-26353701	H1-hESC	embryonic stem cell:	n/a	n/a
13	ZBTB7A	chr11:26353354-26353877	ECC-1	luminal epithelium:	n/a	n/a
14	CTCF	chr11:26352912-26353932	SK-N-SH	brain:	n/a	chr11:26353696-26353704
15	CTCF	chr11:26353199-26353996	A549	lung:	n/a	chr11:26353696-26353704
16	EP300	chr11:26353420-26353843	H1-hESC	embryonic stem cell:	n/a	n/a
17	YY1	chr11:26353434-26353974	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr11:26353314-26354118	PFSK-1	brain:	n/a	n/a
19	SP1	chr11:26353412-26353952	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr11:26353428-26353798	IMR90	lung:	n/a	chr11:26353696-26353704
21	KAP1	chr11:26353237-26354128	U2OS	brain:	n/a	n/a
22	CTCF	chr11:26353437-26353722	ECC-1	luminal epithelium:	n/a	chr11:26353696-26353704
23	CTCF	chr11:26353420-26353570	HAc	cerebellar:	n/a	n/a
24	RAD21	chr11:26353369-26353850	A549	lung:	n/a	n/a
25	RAD21	chr11:26353150-26354019	SK-N-SH	brain:	n/a	n/a
26	MXI1	chr11:26353207-26354425	SK-N-SH	brain:	n/a	chr11:26353639-26353654
27	RAD21	chr11:26353377-26353847	H1-hESC	embryonic stem cell:	n/a	n/a
28	SMC3	chr11:26353383-26354034	SK-N-SH	brain:	n/a	chr11:26353695-26353709
29	CTCF	chr11:26353418-26353670	A549	lung:	n/a	n/a
30	SP1	chr11:26353340-26353836	A549	lung:	n/a	n/a
31	CTCF	chr11:26353420-26353570	K562	blood:	n/a	n/a
32	RAD21	chr11:26353394-26353861	HepG2	liver:	n/a	n/a
33	RAD21	chr11:26353351-26353923	ECC-1	luminal epithelium:	n/a	n/a
34	ZNF143	chr11:26353433-26354067	H1-hESC	embryonic stem cell:	n/a	chr11:26353517-26353535 chr11:26353798-26353816
35	SMC3	chr11:26353296-26353864	Hela-S3	cervix:	n/a	chr11:26353695-26353709
36	CTCF	chr11:26353420-26353570	HFF	foreskin:	n/a	n/a
37	RAD21	chr11:26353421-26353878	A549	lung:	n/a	n/a
38	RCOR1	chr11:26353231-26353849	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr11:26353400-26353550	WI-38	lung:	n/a	n/a
40	CTCF	chr11:26353401-26353806	GM12878	blood:	n/a	chr11:26353696-26353704

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26353156..26354057-chr9:139137195..139137941,2	Hela-S3	cervix:

Variant related genes	Relation type
ANO3	TF binding region
ENSG00000165661	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59802658	1.00[EUR][1000 genomes]
rs59964428	1.00[EUR][1000 genomes]
rs7114653	1.00[EUR][1000 genomes]
rs7940247	1.00[EUR][1000 genomes]
rs7942628	1.00[EUR][1000 genomes]
rs7942713	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26352600-26354400	Active TSS	Brain Anterior Caudate	brain
2	chr11:26353000-26355600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:26353200-26353600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:26353200-26353600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:26353200-26353600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:26353200-26353600	Enhancers	Adipose Nuclei	Adipose
7	chr11:26353200-26353600	Bivalent Enhancer	Fetal Lung	lung
8	chr11:26353200-26353600	Bivalent Enhancer	Fetal Stomach	stomach
9	chr11:26353200-26353800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:26353200-26354000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:26353200-26354000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr11:26353200-26354400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:26353200-26354400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:26353200-26354400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr11:26353200-26354400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
16	chr11:26353200-26354400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:26353400-26353600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:26353400-26353600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:26353400-26353600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
20	chr11:26353400-26353600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:26353400-26353600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
22	chr11:26353400-26353600	Enhancers	Fetal Brain Male	brain
23	chr11:26353400-26353600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:26353400-26353600	Flanking Active TSS	Psoas Muscle	Psoas
25	chr11:26353400-26353600	Enhancers	Right Atrium	heart
26	chr11:26353400-26353600	Active TSS	Stomach Smooth Muscle	stomach
27	chr11:26353400-26353600	Bivalent Enhancer	HSMMtube	muscle
28	chr11:26353400-26353600	Flanking Bivalent TSS/Enh	NH-A	brain
29	chr11:26353400-26353800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:26353400-26353800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:26353400-26353800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
32	chr11:26353400-26353800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:26353400-26353800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:26353400-26353800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:26353400-26353800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
36	chr11:26353400-26353800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
37	chr11:26353400-26353800	Active TSS	Fetal Kidney	kidney
38	chr11:26353400-26353800	Bivalent Enhancer	Placenta	Placenta
39	chr11:26353400-26353800	Bivalent Enhancer	Left Ventricle	heart
40	chr11:26353400-26353800	Enhancers	Lung	lung
41	chr11:26353400-26354000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr11:26353400-26354000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:26353400-26354000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:26353400-26354000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr11:26353400-26354000	Active TSS	Brain Germinal Matrix	brain
46	chr11:26353400-26354000	Active TSS	Colon Smooth Muscle	Colon
47	chr11:26353400-26354000	Enhancers	Fetal Heart	heart
48	chr11:26353400-26354000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
49	chr11:26353400-26354000	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr11:26353400-26354000	Flanking Active TSS	Pancreas	Pancrea

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