Variant report

Variant	rs16916086
Chromosome Location	chr9:3231539-3231540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:3216782..3218740-chr9:3229767..3232121,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12683752	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16916097	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16916457	0.89[YRI][hapmap]
rs16917215	0.82[YRI][hapmap]
rs6476405	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870506	0.90[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1017474	chr9:3019068-3247215	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1028668	chr9:3139007-3262791	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv539939	chr9:3139007-3262791	Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3212000-3241000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:3217200-3245200	Weak transcription	Left Ventricle	heart
3	chr9:3218400-3233200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:3218400-3235000	Weak transcription	Primary B cells from cord blood	blood
5	chr9:3220000-3256600	Weak transcription	Brain Anterior Caudate	brain
6	chr9:3220400-3287400	Weak transcription	Psoas Muscle	Psoas
7	chr9:3221200-3240800	Weak transcription	Fetal Kidney	kidney
8	chr9:3221400-3240800	Weak transcription	GM12878-XiMat	blood
9	chr9:3221600-3238600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:3221800-3236400	Weak transcription	Fetal Brain Female	brain
11	chr9:3221800-3251400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:3221800-3256400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:3222000-3237600	Weak transcription	NHLF	lung
14	chr9:3222000-3243800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:3222000-3246400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:3222000-3247800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr9:3222200-3235200	Weak transcription	Ovary	ovary
18	chr9:3222200-3244400	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:3222200-3244400	Weak transcription	Fetal Thymus	thymus
20	chr9:3222200-3256200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:3222200-3269400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:3222400-3235200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:3222400-3247400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:3222400-3254800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:3223200-3246400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:3223200-3254800	Weak transcription	Brain Angular Gyrus	brain
27	chr9:3223200-3277000	Weak transcription	HSMMtube	muscle
28	chr9:3223400-3246000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr9:3223400-3270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr9:3223600-3233000	Weak transcription	Pancreas	Pancrea
31	chr9:3223600-3243800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:3223600-3246400	Weak transcription	Fetal Intestine Large	intestine
33	chr9:3223600-3247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:3223600-3255400	Weak transcription	Right Ventricle	heart
35	chr9:3223600-3256600	Weak transcription	Thymus	Thymus
36	chr9:3223600-3264400	Weak transcription	Fetal Intestine Small	intestine
37	chr9:3223600-3271600	Weak transcription	Lung	lung
38	chr9:3223600-3284800	Weak transcription	Spleen	Spleen
39	chr9:3224000-3236400	Weak transcription	Fetal Lung	lung
40	chr9:3224000-3275800	Weak transcription	Gastric	stomach
41	chr9:3225200-3234600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:3225200-3236400	Weak transcription	Aorta	Aorta
43	chr9:3225200-3262800	Weak transcription	Esophagus	oesophagus
44	chr9:3225400-3233200	Weak transcription	Primary T cells from cord blood	blood
45	chr9:3225400-3235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:3225400-3240600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:3225400-3247800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:3225600-3233800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:3225600-3235200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:3225600-3236400	Weak transcription	Brain Germinal Matrix	brain

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