Variant report

Variant	rs16916156
Chromosome Location	chr11:26723515-26723516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16916148	0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17243650	0.91[YRI][hapmap]
rs4370890	0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56061726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517765	0.89[AMR][1000 genomes]
rs61073671	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7925046	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs7935594	1.00[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26719400-26724800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:26719800-26724000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:26720200-26724000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:26721200-26741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:26722400-26725200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:26722800-26724000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:26722800-26725200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:26723000-26724000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:26723000-26724000	Weak transcription	Fetal Stomach	stomach
10	chr11:26723000-26725800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:26723400-26723800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:26723400-26725200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:26723400-26726200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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