Variant report

Variant	rs16916315
Chromosome Location	chr8:52364689-52364690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10504119	0.82[EUR][1000 genomes]
rs13279088	0.87[ASN][1000 genomes]
rs1437594	1.00[CEU][hapmap]
rs16916039	1.00[CEU][hapmap]
rs16916309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916332	0.93[ASN][1000 genomes]
rs16916341	0.93[ASN][1000 genomes]
rs16916345	0.93[ASN][1000 genomes]
rs16916354	0.94[ASN][1000 genomes]
rs16916394	0.92[ASN][1000 genomes]
rs7846408	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52337800-52365400	Weak transcription	Left Ventricle	heart
2	chr8:52355400-52374000	Weak transcription	Right Ventricle	heart
3	chr8:52356800-52396200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:52363200-52365600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:52363400-52365800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:52363800-52365200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:52364000-52365400	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:52364000-52366400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:52364200-52365800	Enhancers	Brain Germinal Matrix	brain
10	chr8:52364600-52365800	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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