Variant report

Variant	rs16916794
Chromosome Location	chr10:18331480-18331481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10828127	0.98[ASN][1000 genomes]
rs11012311	0.95[ASN][1000 genomes]
rs11012314	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes]
rs11012330	0.98[ASN][1000 genomes]
rs11012333	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.99[ASN][1000 genomes]
rs11012350	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12355062	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs12356631	0.89[ASN][1000 genomes]
rs12358478	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.99[ASN][1000 genomes]
rs12358488	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16916785	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16916787	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2357781	0.90[ASN][1000 genomes]
rs28478337	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67406532	0.99[ASN][1000 genomes]
rs67552121	0.90[ASN][1000 genomes]
rs72780045	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7893893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs7921720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv894914	chr10:18301221-18335200	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
4	esv3396193	chr10:18329371-18331919	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3333961	chr10:18329646-18331844	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18325600-18333600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:18330000-18333400	Weak transcription	Aorta	Aorta
3	chr10:18331000-18331600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:18331200-18331600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr10:18331200-18332800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:18331200-18335200	Enhancers	NH-A	brain
7	chr10:18331400-18332200	Weak transcription	Ovary	ovary
8	chr10:18331400-18332800	Enhancers	Hela-S3	cervix
9	chr10:18331400-18335200	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links