Variant report

Variant	rs16916797
Chromosome Location	chr10:18333790-18333791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16916801	1.00[EUR][1000 genomes]
rs4570473	1.00[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv894914	chr10:18301221-18335200	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18331200-18335200	Enhancers	NH-A	brain
2	chr10:18331400-18335200	Enhancers	Osteobl	bone
3	chr10:18331600-18334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:18331600-18348800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:18332800-18333800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:18333000-18334000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:18333200-18335000	Enhancers	Hela-S3	cervix
8	chr10:18333400-18334200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:18333400-18334600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:18333400-18335200	Enhancers	NHLF	lung
11	chr10:18333400-18335600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:18333600-18333800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr10:18333600-18334400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:18333600-18334400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:18333600-18337000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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