Variant report

Variant	rs16917100
Chromosome Location	chr8:52919130-52919131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12541846	1.00[JPT][hapmap]
rs16917105	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037140	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138295	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28739322	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28804668	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6982992	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52913800-52920400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:52913800-52920600	Weak transcription	Primary T cells from cord blood	blood
3	chr8:52914600-52920000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:52914800-52920400	Weak transcription	GM12878-XiMat	blood
5	chr8:52916800-52920800	Weak transcription	Pancreas	Pancrea
6	chr8:52917800-52921000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:52918400-52919400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:52918600-52919400	Enhancers	Fetal Thymus	thymus
9	chr8:52918800-52919200	Enhancers	Fetal Stomach	stomach
10	chr8:52918800-52919200	Enhancers	Thymus	Thymus
11	chr8:52919000-52920000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:52919000-52920600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:52919000-52920800	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:52919000-52921000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links