Variant report

Variant	rs16917239
Chromosome Location	chr8:53020902-53020903
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16917338	1.00[AMR][1000 genomes]
rs2001576	1.00[AMR][1000 genomes]
rs2264566	1.00[AMR][1000 genomes]
rs4460393	1.00[AMR][1000 genomes]
rs7814606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:53014000-53025400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:53018000-53021000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:53018000-53021200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:53019200-53029800	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:53019200-53037200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:53019800-53028400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:53020000-53024800	Weak transcription	Brain Germinal Matrix	brain
8	chr8:53020600-53028200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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