Variant report

Variant	rs16918152
Chromosome Location	chr12:9334595-9334596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10492113	1.00[MEX][hapmap]
rs12304948	1.00[MEX][hapmap]
rs16917969	1.00[MEX][hapmap]
rs3026250	1.00[MEX][hapmap]
rs34427370	1.00[AMR][1000 genomes]
rs41393747	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs57660999	1.00[EUR][1000 genomes]
rs59948620	1.00[EUR][1000 genomes]
rs60393674	1.00[EUR][1000 genomes]
rs7315222	1.00[EUR][1000 genomes]
rs73251317	1.00[EUR][1000 genomes]
rs73251322	1.00[EUR][1000 genomes]
rs73251324	1.00[EUR][1000 genomes]
rs73251329	1.00[EUR][1000 genomes]
rs73251332	1.00[EUR][1000 genomes]
rs74060496	1.00[AMR][1000 genomes]
rs74060498	1.00[AMR][1000 genomes]
rs74060501	1.00[AMR][1000 genomes]
rs74063006	1.00[AMR][1000 genomes]
rs7957038	1.00[MEX][hapmap]
rs7980288	1.00[MEX][hapmap]
rs9668937	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv527404	chr12:9250601-9435244	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9309200-9337000	Weak transcription	Primary T cells from cord blood	blood
2	chr12:9323600-9338400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:9328600-9341000	Strong transcription	Liver	Liver
4	chr12:9332600-9336600	Weak transcription	Fetal Lung	lung
5	chr12:9332800-9334600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:9333800-9336800	Weak transcription	Lung	lung
7	chr12:9333800-9336800	Weak transcription	Pancreas	Pancrea

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