Variant report

Variant	rs16918341
Chromosome Location	chr11:92711258-92711259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57153647	1.00[EUR][1000 genomes]
rs57943759	1.00[EUR][1000 genomes]
rs7933642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947905	1.00[EUR][1000 genomes]
rs7951518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92709000-92711400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:92710600-92714000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:92710800-92712000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:92710800-92712000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:92710800-92713200	Enhancers	Fetal Muscle Leg	muscle
6	chr11:92711000-92713400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:92711200-92712200	Enhancers	Fetal Brain Male	brain
8	chr11:92711200-92713000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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