Variant report

Variant	rs16918383
Chromosome Location	chr11:92753887-92753888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11824768	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1396374	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58587118	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768919	0.96[ASN][1000 genomes]
rs768920	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942988	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048275	chr11:92719681-92795212	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv526546	chr11:92742186-92851178	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92751200-92754800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:92751200-92754800	Enhancers	HMEC	breast
3	chr11:92751400-92754200	Weak transcription	Aorta	Aorta
4	chr11:92752600-92755000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:92752800-92754800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:92752800-92754800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:92752800-92754800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:92752800-92754800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:92753000-92755000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:92753200-92754000	Flanking Active TSS	HSMM	muscle
11	chr11:92753200-92754200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:92753200-92754200	Enhancers	Fetal Stomach	stomach
13	chr11:92753200-92754600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:92753200-92754600	Enhancers	A549	lung
15	chr11:92753200-92754800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:92753200-92754800	Enhancers	NHDF-Ad	bronchial
17	chr11:92753200-92755000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:92753400-92754200	Flanking Active TSS	NH-A	brain
19	chr11:92753400-92754200	Flanking Active TSS	NHEK	skin
20	chr11:92753400-92754400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:92753400-92754600	Enhancers	Brain Germinal Matrix	brain
22	chr11:92753600-92754000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:92753600-92754000	Flanking Active TSS	Hela-S3	cervix
24	chr11:92753600-92754000	Flanking Active TSS	HSMMtube	muscle
25	chr11:92753600-92754000	Flanking Active TSS	Osteobl	bone
26	chr11:92753600-92754200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr11:92753600-92754200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:92753600-92754200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:92753600-92754400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:92753600-92754600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:92753600-92754600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:92753600-92755600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:92753800-92754000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:92753800-92754000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:92753800-92754200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:92753800-92754200	Flanking Active TSS	NHLF	lung
37	chr11:92753800-92754400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr11:92753800-92754800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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