Variant report

Variant	rs16918846
Chromosome Location	chr8:61238151-61238152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16926000	1.00[YRI][hapmap]
rs16926006	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16926065	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs58620061	1.00[AMR][1000 genomes]
rs7014277	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7820639	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1022752	chr8:61095248-61322302	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv831333	chr8:61102862-61275122	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv831334	chr8:61148796-61330190	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61237000-61238400	Enhancers	Fetal Lung	lung
2	chr8:61237200-61238200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr8:61237200-61238400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:61237800-61238200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:61237800-61238200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:61237800-61239600	Enhancers	K562	blood
7	chr8:61238000-61238200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:61238000-61238200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:61238000-61238200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:61238000-61238800	Bivalent Enhancer	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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