Variant report

Variant	rs16918984
Chromosome Location	chr11:93207333-93207334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11820244	1.00[AMR][1000 genomes]
rs1939558	1.00[AMR][1000 genomes]
rs2399678	1.00[AMR][1000 genomes]
rs2399687	1.00[AMR][1000 genomes]
rs2895471	1.00[AMR][1000 genomes]
rs4753087	1.00[AMR][1000 genomes]
rs4753469	1.00[AMR][1000 genomes]
rs4753479	1.00[AMR][1000 genomes]
rs6483252	1.00[AMR][1000 genomes]
rs7111644	1.00[AMR][1000 genomes]
rs7127955	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93200600-93214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:93201600-93207600	Weak transcription	Pancreas	Pancrea
3	chr11:93206200-93210600	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:93206800-93210600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:93207000-93207400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:93207000-93207800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:93207000-93208200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:93207000-93208800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:93207000-93209000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:93207200-93207400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:93207200-93207400	Active TSS	Spleen	Spleen
13	chr11:93207200-93207600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:93207200-93207800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:93207200-93207800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:93207200-93207800	Enhancers	Fetal Heart	heart
17	chr11:93207200-93208800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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