Variant report

Variant	rs16919046
Chromosome Location	chr8:67333993-67333994
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:66948659..66949166-chr8:67333647..67334531,2	MCF-7	breast:
2	chr8:66949252..66949997-chr8:67333809..67334625,2	MCF-7	breast:
3	chr8:67053287..67054191-chr8:67333871..67334680,3	MCF-7	breast:
4	chr8:66976835..66977882-chr8:67333673..67334537,6	MCF-7	breast:
5	chr8:66948854..66949575-chr8:67333726..67334881,3	K562	blood:
6	chr8:67333368..67336415-chr8:67339559..67342231,3	MCF-7	breast:
7	chr8:67088832..67090094-chr8:67333566..67334549,4	MCF-7	breast:
8	chr8:67331927..67334927-chr8:67335306..67337724,3	K562	blood:
9	chr8:67088691..67089331-chr8:67333697..67334597,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYBL1-1	chr8:67331824-67336017	XLOC_007111
2	lnc-MYBL1-1	chr8:67331822-67336017	NONHSAT127020

No data

Variant related genes	Relation type
ENSG00000246145	Chromatin interaction
ENSG00000179041	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10504396	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11987071	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11989945	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11992832	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11993412	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11993452	0.97[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11994448	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11995689	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11997195	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11998019	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12541622	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12547412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12549283	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12549484	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12550686	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16919047	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16932815	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2098945	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28372872	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35352031	0.88[CEU][hapmap]
rs3739338	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4737227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4737229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737233	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4737785	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4737787	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4737788	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4737793	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737794	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737796	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737799	0.82[ASN][1000 genomes]
rs55681208	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55742362	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56176340	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57217048	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57462183	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57882940	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57925216	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57951167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59825535	0.86[AMR][1000 genomes]
rs61646267	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6472268	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6472278	0.88[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs66470447	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66713752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66716606	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66779163	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66967250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66996327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67015438	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67433773	0.80[ASN][1000 genomes]
rs67436695	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67443499	0.86[AMR][1000 genomes]
rs67472590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67556627	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67814353	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67928664	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6985120	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6989573	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6993146	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6994570	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6998057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001576	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7009437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013081	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014652	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7015791	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72652710	0.86[AMR][1000 genomes]
rs72652713	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72652714	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72652715	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72652728	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72652745	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72652748	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73247981	0.86[AMR][1000 genomes]
rs73247982	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73249829	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73253606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7824057	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7828145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7838277	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7838488	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67330800-67334600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:67330800-67335200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:67330800-67337000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:67330800-67337000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:67330800-67340200	Weak transcription	Pancreas	Pancrea
6	chr8:67331000-67340200	Weak transcription	Liver	Liver
7	chr8:67332400-67334000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:67332600-67335600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:67332600-67335600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:67332600-67335600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:67332600-67336800	Weak transcription	Placenta	Placenta
12	chr8:67332800-67334000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:67332800-67334400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:67332800-67335600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:67333000-67334400	Enhancers	A549	lung
16	chr8:67333000-67334600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:67333000-67335200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:67333200-67334000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:67333200-67334000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:67333200-67334200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:67333200-67334600	Enhancers	HUVEC	blood vessel
22	chr8:67333200-67334600	Enhancers	NHDF-Ad	bronchial
23	chr8:67333200-67340200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr8:67333400-67334000	Enhancers	Osteobl	bone
25	chr8:67333400-67334200	Enhancers	Brain Germinal Matrix	brain
26	chr8:67333400-67334400	Enhancers	NH-A	brain
27	chr8:67333400-67334400	Enhancers	NHEK	skin
28	chr8:67333600-67334000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:67333600-67334000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:67333600-67334000	Enhancers	K562	blood
31	chr8:67333600-67334200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr8:67333600-67334400	Enhancers	GM12878-XiMat	blood
33	chr8:67333600-67335600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:67333600-67335600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr8:67333600-67336000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:67333800-67334200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:67333800-67334400	Enhancers	NHLF	lung
38	chr8:67333800-67335400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:67333800-67335600	Enhancers	HUES6 Cell Line	embryonic stem cell

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