Variant report

Variant	rs16922487
Chromosome Location	chr10:22888052-22888053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22885033..22888742-chr10:22902706..22906221,3	K562	blood:
2	chr10:22887097..22891017-chr10:22894744..22899143,5	K562	blood:
3	chr10:22887962..22890851-chr10:22904163..22906680,2	K562	blood:
4	chr10:22882953..22885596-chr10:22887639..22890414,2	K562	blood:
5	chr10:22887541..22890233-chr10:22900677..22902748,2	K562	blood:
6	chr10:22882953..22885170-chr10:22887625..22889139,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1778331	0.80[YRI][hapmap]
rs1778353	0.80[YRI][hapmap]
rs2559527	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
5	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
6	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:22870400-22895200	Weak transcription	HepG2	liver
10	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
11	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:22877400-22890200	Weak transcription	Right Ventricle	heart
13	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr10:22879400-22888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:22880200-22889400	Weak transcription	Aorta	Aorta
19	chr10:22880200-22890000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:22880200-22890400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:22880200-22893400	Weak transcription	Ovary	ovary
22	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:22880400-22890400	Weak transcription	Fetal Intestine Small	intestine
27	chr10:22880400-22896600	Weak transcription	Liver	Liver
28	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:22880800-22889400	Weak transcription	Esophagus	oesophagus
30	chr10:22880800-22890400	Weak transcription	Adipose Nuclei	Adipose
31	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
32	chr10:22881600-22890200	Weak transcription	Right Atrium	heart
33	chr10:22881800-22889200	Weak transcription	Thymus	Thymus
34	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:22882200-22889200	Weak transcription	Lung	lung
36	chr10:22882200-22889200	Weak transcription	Dnd41	blood
37	chr10:22882200-22890200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:22883200-22893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:22883200-22894000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:22884000-22888600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr10:22885200-22888200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:22885200-22889400	Enhancers	Brain Cingulate Gyrus	brain
45	chr10:22885200-22891200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
46	chr10:22885200-22894000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr10:22885400-22890400	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr10:22885600-22889600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr10:22885600-22891000	Genic enhancers	Primary T cells from cord blood	blood

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