Variant report

Variant	rs16922916
Chromosome Location	chr12:10816579-10816580
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10492349	0.89[CEU][hapmap];0.81[GIH][hapmap]
rs2125088	1.00[CEU][hapmap];0.89[GIH][hapmap]
rs2417908	0.82[CEU][hapmap]
rs3463	0.82[CEU][hapmap]
rs4763211	0.82[CEU][hapmap]
rs7311796	0.81[CEU][hapmap]
rs897881	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv607	chr12:10776867-10821535	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1050613	chr12:10809805-10844399	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10809800-10818400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:10809800-10818600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:10810000-10818600	Weak transcription	HMEC	breast
4	chr12:10810600-10821200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:10811800-10819200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:10812000-10819800	Weak transcription	HUVEC	blood vessel
7	chr12:10813800-10816600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:10814000-10817000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr12:10815000-10820400	Weak transcription	Stomach Mucosa	stomach
10	chr12:10815400-10816600	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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