Variant report

Variant	rs16923436
Chromosome Location	chr8:59309481-59309482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59309029..59311311-chr8:59328831..59330958,2	K562	blood:
2	chr8:59308707..59310940-chr8:59311136..59313539,2	MCF-7	breast:
3	chr8:59301456..59304791-chr8:59307083..59310063,3	K562	blood:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12679610	0.84[AMR][1000 genomes]
rs61011094	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61268712	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61507625	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62512898	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62512901	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62512903	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930872	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs930873	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv438058	chr8:59305833-59318448	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59307400-59309600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:59307600-59309800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:59308000-59309600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:59308000-59309600	Enhancers	Fetal Lung	lung
5	chr8:59308000-59309800	Enhancers	Colon Smooth Muscle	Colon
6	chr8:59308000-59310800	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:59308000-59311200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:59308200-59309800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:59308200-59310600	Enhancers	Adipose Nuclei	Adipose
10	chr8:59308200-59310800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:59308400-59310400	Enhancers	Liver	Liver
12	chr8:59308600-59311400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr8:59308600-59312400	Weak transcription	Fetal Stomach	stomach
14	chr8:59308800-59309800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:59309000-59309600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:59309000-59309600	Enhancers	Esophagus	oesophagus
17	chr8:59309000-59309600	Enhancers	Right Atrium	heart
18	chr8:59309000-59309800	Active TSS	Fetal Brain Male	brain
19	chr8:59309000-59309800	Enhancers	Placenta	Placenta
20	chr8:59309000-59310400	Enhancers	Fetal Heart	heart
21	chr8:59309200-59309600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:59309200-59309600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr8:59309200-59309600	Enhancers	K562	blood
24	chr8:59309200-59310200	Active TSS	Primary B cells from cord blood	blood
25	chr8:59309200-59310400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:59309400-59309600	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr8:59309400-59309600	Flanking Active TSS	HepG2	liver
28	chr8:59309400-59309800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:59309400-59309800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr8:59309400-59309800	Active TSS	Duodenum Smooth Muscle	Duodenum

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