Variant report

Variant	rs16923541
Chromosome Location	chr8:59447575-59447576
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7839207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv6212	chr8:59435671-59451750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59440400-59465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59442800-59447600	Weak transcription	Gastric	stomach
3	chr8:59443000-59450800	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:59445400-59448000	Enhancers	Placenta	Placenta
5	chr8:59446000-59447800	Enhancers	Fetal Muscle Trunk	muscle
6	chr8:59446400-59448600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:59446600-59447800	Enhancers	Right Ventricle	heart
8	chr8:59446600-59448200	Enhancers	Left Ventricle	heart
9	chr8:59446800-59448000	Enhancers	Lung	lung
10	chr8:59446800-59448400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:59446800-59448600	Enhancers	Spleen	Spleen
12	chr8:59447000-59448000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:59447200-59447600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr8:59447200-59452000	Weak transcription	Right Atrium	heart
15	chr8:59447400-59448200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:59447400-59448400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:59447400-59448800	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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