Variant report

Variant	rs16923631
Chromosome Location	chr8:59565073-59565074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59561564..59565791-chr8:59570091..59573890,6	MCF-7	breast:
2	chr8:59558665..59561623-chr8:59562018..59565926,5	K562	blood:
3	chr8:59554333..59557922-chr8:59563226..59566504,4	K562	blood:

Variant related genes	Relation type
ENSG00000035681	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10086130	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093782	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10098355	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10099231	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2054900	1.00[EUR][1000 genomes]
rs2228505	1.00[EUR][1000 genomes]
rs2279459	1.00[EUR][1000 genomes]
rs28548238	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3816847	1.00[ASW][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4737505	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4738695	1.00[ASW][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58627447	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58866790	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60289621	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60504120	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60780937	1.00[EUR][1000 genomes]
rs7833413	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59510400-59570200	Weak transcription	Colonic Mucosa	Colon
2	chr8:59522000-59570200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:59543200-59570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:59543200-59570200	Weak transcription	Fetal Kidney	kidney
5	chr8:59543400-59570000	Weak transcription	Brain Angular Gyrus	brain
6	chr8:59547200-59570200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:59551000-59570400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:59552600-59570400	Weak transcription	Liver	Liver
9	chr8:59554400-59570000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:59554600-59569600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:59556200-59569600	Weak transcription	Ovary	ovary
12	chr8:59556800-59569800	Weak transcription	HUVEC	blood vessel
13	chr8:59558400-59569600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:59560200-59569600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:59560200-59569600	Weak transcription	Hela-S3	cervix
16	chr8:59560200-59570200	Weak transcription	HSMM	muscle
17	chr8:59560200-59570200	Weak transcription	NHEK	skin
18	chr8:59560200-59571000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:59560400-59569600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:59560600-59569800	Weak transcription	Osteobl	bone
21	chr8:59560800-59569600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:59561400-59569600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:59561400-59569800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr8:59561400-59570400	Weak transcription	Lung	lung
25	chr8:59561400-59571000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:59561600-59569600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:59561600-59569600	Weak transcription	Brain Substantia Nigra	brain
28	chr8:59561600-59569600	Weak transcription	HSMMtube	muscle
29	chr8:59561800-59566600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr8:59561800-59569600	Weak transcription	Brain Germinal Matrix	brain
31	chr8:59562000-59565600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr8:59562000-59565800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr8:59562000-59569600	Weak transcription	Fetal Intestine Large	intestine
34	chr8:59562000-59569800	Weak transcription	HepG2	liver
35	chr8:59562200-59565400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr8:59562200-59565400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr8:59562200-59565400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:59562200-59569600	Weak transcription	NHDF-Ad	bronchial
39	chr8:59562400-59565200	Enhancers	Primary B cells from peripheral blood	blood
40	chr8:59562400-59565400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr8:59562400-59565400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr8:59562400-59569600	Weak transcription	Fetal Stomach	stomach
43	chr8:59562400-59569800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:59562400-59570200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr8:59562400-59570200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:59562400-59570200	Weak transcription	Placenta	Placenta
47	chr8:59562400-59571200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:59562400-59571200	Weak transcription	Gastric	stomach
49	chr8:59562600-59565400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr8:59562600-59569800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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