Variant report

Variant	rs16923737
Chromosome Location	chr8:59650994-59650995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10504259	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923705	1.00[CEU][hapmap]
rs16923708	1.00[CEU][hapmap]
rs2130067	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737514	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66497773	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67369638	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72647494	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72647496	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59650400-59651200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:59650400-59651200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:59650600-59651200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:59650600-59651400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:59650600-59651400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:59650600-59651400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:59650600-59651400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:59650600-59651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:59650800-59651000	Enhancers	Fetal Thymus	thymus
10	chr8:59650800-59651400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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