Variant report

Variant	rs16924104
Chromosome Location	chr8:59772118-59772119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59768252..59769801-chr8:59771211..59773823,2	K562	blood:
2	chr8:59766928..59769439-chr8:59769893..59772631,2	K562	blood:
3	chr8:59766292..59767877-chr8:59770648..59773192,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10504264	0.84[YRI][hapmap]
rs1075418	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59746400-59773200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:59755800-59772200	Weak transcription	Small Intestine	intestine
3	chr8:59758400-59777400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:59761000-59777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59764200-59777600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:59767000-59773800	Enhancers	HSMM	muscle
8	chr8:59768000-59773600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:59768200-59773800	Enhancers	NH-A	brain
10	chr8:59768400-59773000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr8:59770400-59774600	Strong transcription	Primary T cells from cord blood	blood
12	chr8:59770600-59773600	Enhancers	Fetal Heart	heart
13	chr8:59771200-59772400	Enhancers	NHEK	skin
14	chr8:59771200-59774600	Enhancers	Osteobl	bone
15	chr8:59771200-59777200	Weak transcription	Aorta	Aorta
16	chr8:59771200-59777200	Weak transcription	Brain Hippocampus Middle	brain
17	chr8:59771400-59772200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:59771400-59772200	Enhancers	HMEC	breast
19	chr8:59771400-59772400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:59771400-59772400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:59771400-59772400	Enhancers	HUVEC	blood vessel
22	chr8:59771400-59772600	Weak transcription	Stomach Mucosa	stomach
23	chr8:59771400-59772600	Weak transcription	Thymus	Thymus
24	chr8:59771400-59772800	Weak transcription	HSMMtube	muscle
25	chr8:59771400-59773000	Enhancers	Duodenum Mucosa	Duodenum
26	chr8:59771400-59773000	Weak transcription	Fetal Intestine Large	intestine
27	chr8:59771400-59773000	Weak transcription	Fetal Stomach	stomach
28	chr8:59771400-59773000	Enhancers	A549	lung
29	chr8:59771400-59773200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:59771400-59773200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:59771400-59773400	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:59771400-59773600	Weak transcription	Fetal Kidney	kidney
33	chr8:59771400-59774200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr8:59771400-59774400	Enhancers	NHDF-Ad	bronchial
35	chr8:59771400-59775200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr8:59771400-59775400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:59771400-59776400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:59771400-59776400	Weak transcription	Colon Smooth Muscle	Colon
39	chr8:59771400-59776800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:59771400-59777000	Weak transcription	Brain Anterior Caudate	brain
41	chr8:59771400-59777200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:59771400-59777200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:59771400-59777200	Weak transcription	Brain Angular Gyrus	brain
44	chr8:59771400-59777200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:59771400-59777200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:59771400-59777200	Weak transcription	Fetal Lung	lung
47	chr8:59771400-59777400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr8:59771400-59777600	Weak transcription	Gastric	stomach
49	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:59771600-59773400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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