Variant report

Variant	rs16924954
Chromosome Location	chr8:60444517-60444518
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16924956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924957	1.00[AFR][1000 genomes]
rs28570386	1.00[AFR][1000 genomes]
rs9692652	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6215	chr8:60440190-60484139	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60441600-60444600	Active TSS	Colon Smooth Muscle	Colon
2	chr8:60443600-60446000	Enhancers	Primary T cells from cord blood	blood
3	chr8:60443800-60445400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:60443800-60445600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:60443800-60445800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:60443800-60445800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:60444000-60444800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:60444200-60444600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:60444200-60444800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:60444200-60445200	Weak transcription	Fetal Thymus	thymus
11	chr8:60444200-60445600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:60444200-60446000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:60444400-60445000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:60444400-60445400	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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