Variant report

Variant	rs16925345
Chromosome Location	chr11:34256075-34256076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34244635..34246968-chr11:34254314..34256180,3	K562	blood:
2	chr11:34244635..34246968-chr11:34254432..34256180,2	K562	blood:
3	chr11:34229441..34231710-chr11:34255472..34258756,3	MCF-7	breast:
4	chr11:34256033..34257760-chr11:34260641..34262431,2	K562	blood:
5	chr11:34254769..34257518-chr11:34263900..34266853,2	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2957490	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762905	chr11:34238653-34256130	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv897204	chr11:34248229-34271712	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34245200-34263800	Weak transcription	Right Atrium	heart
2	chr11:34245200-34264200	Weak transcription	Aorta	Aorta
3	chr11:34245600-34263600	Weak transcription	Right Ventricle	heart
4	chr11:34247000-34257400	Weak transcription	Fetal Stomach	stomach
5	chr11:34249600-34263600	Weak transcription	Gastric	stomach
6	chr11:34254000-34256400	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:34254400-34256200	Enhancers	Primary B cells from cord blood	blood
8	chr11:34254600-34256200	Enhancers	HepG2	liver
9	chr11:34254600-34256400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:34254600-34258800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:34254800-34256400	Enhancers	Fetal Intestine Small	intestine
12	chr11:34254800-34257200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:34254800-34257600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:34255000-34257600	Enhancers	Fetal Thymus	thymus
15	chr11:34255400-34256200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr11:34255400-34256200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr11:34255400-34256200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:34255400-34256200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:34255400-34256200	Flanking Active TSS	A549	lung
20	chr11:34255400-34256200	Flanking Active TSS	GM12878-XiMat	blood
21	chr11:34255400-34256400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:34255400-34256400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:34255400-34256400	Enhancers	Primary T cells from cord blood	blood
24	chr11:34255400-34256400	Enhancers	Primary hematopoietic stem cells	blood
25	chr11:34255400-34256400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:34255400-34256400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr11:34255400-34256400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:34255400-34256400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:34255400-34257200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr11:34255400-34257200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr11:34255400-34257400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr11:34255400-34257400	Enhancers	Stomach Mucosa	stomach
33	chr11:34255400-34257600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:34255400-34257600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:34255400-34257800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:34255400-34258200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr11:34255400-34258600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr11:34255600-34256200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:34255600-34256200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:34255600-34256200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:34255600-34256200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:34255600-34256200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:34255600-34256200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:34255600-34256200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:34255600-34256200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:34255600-34256200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:34255600-34256200	Enhancers	Esophagus	oesophagus
48	chr11:34255600-34256200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:34255600-34256200	Enhancers	Left Ventricle	heart
50	chr11:34255600-34256200	Enhancers	Lung	lung

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