Variant report

Variant	rs16925610
Chromosome Location	chr8:60964453-60964454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:60964375..60965042-chr8:61309334..61310082,3	MCF-7	breast:
2	chr8:60962674..60964910-chr8:60968164..60970440,2	MCF-7	breast:
3	chr8:60964406..60965411-chr8:61048384..61049349,5	K562	blood:
4	chr8:60964154..60965120-chr8:61309098..61310160,4	K562	blood:
5	chr8:60964176..60964834-chr8:61047002..61047691,2	MCF-7	breast:
6	chr8:60964347..60964915-chr8:61048286..61049253,3	MCF-7	breast:
7	chr8:60964273..60965332-chr8:61048344..61049285,8	MCF-7	breast:
8	chr8:60964385..60967219-chr8:61047081..61049350,2	K562	blood:

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16925595	0.85[LWK][hapmap]
rs16925603	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16925687	0.90[AMR][1000 genomes]
rs2088345	0.85[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:60962600-60964800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:60963800-60964800	Enhancers	HUVEC	blood vessel
4	chr8:60964000-60964600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:60964000-60964600	Enhancers	Fetal Thymus	thymus
6	chr8:60964000-60964800	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:60964000-60964800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:60964000-60965000	Enhancers	Primary B cells from cord blood	blood
9	chr8:60964000-60965000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:60964000-60965000	Enhancers	Dnd41	blood
11	chr8:60964000-60965400	Enhancers	K562	blood
12	chr8:60964000-60965600	Enhancers	HMEC	breast
13	chr8:60964200-60964600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:60964200-60964600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:60964200-60964600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr8:60964200-60964600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:60964200-60964600	Enhancers	Fetal Intestine Large	intestine
18	chr8:60964200-60964600	Enhancers	Hela-S3	cervix
19	chr8:60964200-60964600	Enhancers	NHEK	skin
20	chr8:60964200-60964800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr8:60964200-60964800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:60964200-60964800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr8:60964200-60964800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr8:60964200-60964800	Enhancers	Primary hematopoietic stem cells	blood
25	chr8:60964200-60964800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:60964200-60964800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr8:60964200-60964800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:60964200-60964800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr8:60964200-60964800	Enhancers	Stomach Mucosa	stomach
30	chr8:60964200-60964800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr8:60964200-60965200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:60964200-60965400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:60964200-60965600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:60964200-60965600	Enhancers	Colon Smooth Muscle	Colon
35	chr8:60964400-60964600	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr8:60964400-60964600	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr8:60964400-60964600	Enhancers	A549	lung
38	chr8:60964400-60964800	Enhancers	Adipose Nuclei	Adipose
39	chr8:60964400-60964800	Enhancers	Fetal Intestine Small	intestine
40	chr8:60964400-60964800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr8:60964400-60964800	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr8:60964400-60964800	Flanking Active TSS	GM12878-XiMat	blood
43	chr8:60964400-60965000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:60964400-60965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:60964400-60965600	Enhancers	Rectal Smooth Muscle	rectum

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