Variant report

Variant	rs16925621
Chromosome Location	chr8:60965714-60965715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16925594	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:60964800-60968000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:60964800-60968400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:60964800-60968400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:60964800-60969200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:60964800-60969400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:60964800-60969600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:60965000-60965800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:60965000-60968200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:60965200-60969400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:60965400-60965800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:60965400-60969200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:60965600-60968000	Weak transcription	GM12878-XiMat	blood
14	chr8:60965600-60969200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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