Variant report

Variant	rs16926275
Chromosome Location	chr8:61450594-61450595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61440745..61443424-chr8:61450205..61452347,2	MCF-7	breast:
2	chr8:61430121..61431821-chr8:61449801..61452122,2	K562	blood:
3	chr8:61446080..61449984-chr8:61450187..61453162,6	K562	blood:
4	chr8:61441691..61443859-chr8:61448875..61451711,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16918848	1.00[AMR][1000 genomes]
rs16926079	1.00[AMR][1000 genomes]
rs16926113	1.00[AMR][1000 genomes]
rs16926114	1.00[AMR][1000 genomes]
rs16926128	1.00[AMR][1000 genomes]
rs16926130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61433800-61472600	Weak transcription	HUVEC	blood vessel
2	chr8:61434600-61467600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:61434600-61472600	Weak transcription	Placenta	Placenta
4	chr8:61434800-61452200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:61434800-61458000	Weak transcription	Dnd41	blood
6	chr8:61434800-61480600	Weak transcription	HMEC	breast
7	chr8:61435400-61470800	Weak transcription	NHEK	skin
8	chr8:61435400-61471800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:61437200-61462600	Weak transcription	NH-A	brain
10	chr8:61437400-61463200	Weak transcription	HSMM	muscle
11	chr8:61437600-61451000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:61438000-61488600	Weak transcription	Fetal Brain Female	brain
13	chr8:61438200-61450800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:61438400-61469600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:61439000-61453000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:61439400-61455800	Weak transcription	Fetal Thymus	thymus
17	chr8:61439400-61494600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:61440800-61480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr8:61443800-61472800	Weak transcription	Thymus	Thymus
20	chr8:61444000-61462800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:61444800-61453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:61446000-61462400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:61446200-61451000	Weak transcription	Brain Substantia Nigra	brain
24	chr8:61446800-61455400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:61446800-61459200	Weak transcription	Fetal Intestine Large	intestine
26	chr8:61447400-61450600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:61447400-61450600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr8:61447400-61451000	Weak transcription	Spleen	Spleen
29	chr8:61447400-61453800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:61447400-61463600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:61447400-61466800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:61447600-61451200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr8:61447600-61452000	Weak transcription	Primary T cells from cord blood	blood
34	chr8:61447600-61462800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr8:61447600-61465400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:61447600-61469200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:61447600-61472600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:61447800-61466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:61447800-61466800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:61448000-61457600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:61448000-61457600	Weak transcription	K562	blood
42	chr8:61448200-61451200	Weak transcription	HepG2	liver
43	chr8:61448200-61451800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr8:61448200-61455600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:61448400-61450600	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr8:61448400-61450800	Weak transcription	Brain Anterior Caudate	brain
47	chr8:61448400-61451000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:61448400-61453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr8:61448400-61453600	Weak transcription	NHLF	lung
50	chr8:61448600-61450800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links