Variant report

Variant	rs16927156
Chromosome Location	chr8:62206203-62206204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10957188	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957189	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12547350	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12680454	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1812574	0.96[AFR][1000 genomes]
rs1812575	0.96[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1812576	0.96[AFR][1000 genomes]
rs2919307	0.86[CHB][hapmap]
rs2931293	0.82[CHB][hapmap]
rs2931296	0.86[CHB][hapmap]
rs2978523	0.86[CHB][hapmap]
rs2978526	0.86[CHB][hapmap]
rs2978528	0.86[CHB][hapmap]
rs2978559	0.86[CHB][hapmap]
rs2978561	1.00[CHB][hapmap]
rs2978562	0.86[CHB][hapmap]
rs3843017	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3844336	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3852343	0.94[AFR][1000 genomes]
rs3852344	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3857973	0.96[AFR][1000 genomes]
rs3864674	0.95[AFR][1000 genomes]
rs3889296	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3912535	0.94[AFR][1000 genomes]
rs3912536	0.96[AFR][1000 genomes]
rs3912537	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4336607	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57387343	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59448014	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60119726	0.96[AFR][1000 genomes]
rs61037552	0.91[AFR][1000 genomes]
rs61409316	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61592776	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61671182	0.96[AFR][1000 genomes]
rs68017812	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6997673	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7008061	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7838420	0.94[AFR][1000 genomes]
rs7844667	0.96[AFR][1000 genomes]
rs7844889	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv831336	chr8:62188396-62364873	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62202000-62216800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:62203400-62216800	Weak transcription	Brain Angular Gyrus	brain
3	chr8:62203400-62217000	Weak transcription	Brain Anterior Caudate	brain
4	chr8:62204400-62211800	Weak transcription	Fetal Brain Female	brain
5	chr8:62204400-62216800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:62204600-62217000	Weak transcription	Fetal Brain Male	brain

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