Variant report

Variant	rs16927317
Chromosome Location	chr10:27042162-27042163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26985613..26987718-chr10:27041852..27044326,2	K562	blood:
2	chr10:27028106..27031090-chr10:27040562..27042712,2	K562	blood:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16927315	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4628582	1.00[YRI][hapmap]
rs73596307	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
3	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
6	chr10:27023400-27057800	Weak transcription	Gastric	stomach
7	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
8	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
11	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:27025800-27044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
16	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
17	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:27027200-27043600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:27027400-27044000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:27028200-27044400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:27028400-27069800	Weak transcription	NHLF	lung
25	chr10:27028600-27051600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:27028600-27062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:27029600-27051200	Weak transcription	Brain Anterior Caudate	brain
28	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
29	chr10:27030200-27043000	Strong transcription	Primary B cells from cord blood	blood
30	chr10:27030200-27048400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:27031200-27049600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:27031400-27049800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:27032000-27043600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:27032000-27068200	Weak transcription	Small Intestine	intestine
35	chr10:27032000-27069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:27032400-27069400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:27032400-27069600	Weak transcription	Lung	lung
38	chr10:27032600-27053400	Weak transcription	Left Ventricle	heart
39	chr10:27032600-27069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:27032800-27060600	Weak transcription	Brain Substantia Nigra	brain
41	chr10:27033200-27043400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:27033200-27044200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:27033200-27064000	Weak transcription	HepG2	liver
44	chr10:27033600-27051000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:27033600-27069200	Weak transcription	Psoas Muscle	Psoas
46	chr10:27034000-27044000	Weak transcription	Fetal Lung	lung
47	chr10:27034000-27056400	Weak transcription	Fetal Brain Female	brain
48	chr10:27034000-27061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:27034000-27069000	Weak transcription	Colonic Mucosa	Colon
50	chr10:27034000-27069600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links