Variant report

Variant	rs16927608
Chromosome Location	chr9:8349805-8349806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10124014	0.90[GIH][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs10511492	1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340202	1.00[JPT][hapmap]
rs12342801	0.93[ASW][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343024	1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap]
rs12349797	0.81[GIH][hapmap]
rs1500319	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16927610	1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17559269	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17559283	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909763	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7867463	0.80[ASN][1000 genomes]
rs7868532	1.00[JPT][hapmap]
rs996924	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892225	chr9:8345072-8379313	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain
7	chr9:8341800-8372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:8348000-8350400	Enhancers	Brain Cingulate Gyrus	brain
9	chr9:8348000-8350400	Enhancers	Brain Hippocampus Middle	brain
10	chr9:8348400-8350400	Enhancers	Fetal Heart	heart
11	chr9:8348600-8350000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr9:8349000-8350000	Enhancers	Brain Substantia Nigra	brain
13	chr9:8349200-8351600	Enhancers	Fetal Lung	lung
14	chr9:8349400-8350200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:8349400-8350200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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