Variant report

Variant	rs16928021
Chromosome Location	chr8:62782308-62782309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62715569..62718009-chr8:62781744..62783321,2	K562	blood:
2	chr8:62780628..62782972-chr8:62782976..62785697,2	K562	blood:
3	chr8:62781573..62783288-chr8:62786712..62789501,2	K562	blood:
4	chr8:62764591..62766884-chr8:62781843..62783885,2	K562	blood:
5	chr8:62775963..62778241-chr8:62780907..62783837,2	K562	blood:

Variant related genes	Relation type
ENSG00000254119	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16928003	0.94[EUR][1000 genomes]
rs16928014	0.94[EUR][1000 genomes]
rs16928027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928043	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6991613	0.81[EUR][1000 genomes]
rs6994589	0.87[EUR][1000 genomes]
rs7004538	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012433	0.94[EUR][1000 genomes]
rs72660969	0.81[EUR][1000 genomes]
rs72660970	0.81[EUR][1000 genomes]
rs72660973	0.81[EUR][1000 genomes]
rs72660974	0.81[EUR][1000 genomes]
rs72660976	0.81[EUR][1000 genomes]
rs72660977	0.81[EUR][1000 genomes]
rs72660978	0.81[EUR][1000 genomes]
rs72660980	0.81[EUR][1000 genomes]
rs72660982	0.94[EUR][1000 genomes]
rs72660983	0.94[EUR][1000 genomes]
rs72660991	0.94[EUR][1000 genomes]
rs72660993	0.94[EUR][1000 genomes]
rs72660996	0.94[EUR][1000 genomes]
rs72660998	0.94[EUR][1000 genomes]
rs72660999	0.94[EUR][1000 genomes]
rs72662613	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662617	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662620	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662627	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662636	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662649	1.00[EUR][1000 genomes]
rs7828781	0.81[EUR][1000 genomes]
rs7840693	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv611427	chr8:62733267-62848952	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62781800-62783200	Enhancers	Fetal Brain Male	brain

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