Variant report

Variant	rs16928387
Chromosome Location	chr11:36113520-36113521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36098888..36101703-chr11:36110167..36114416,3	K562	blood:
2	chr11:36110744..36113675-chr11:36128457..36130983,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12802388	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36092200-36120200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:36097000-36119600	Weak transcription	Psoas Muscle	Psoas
3	chr11:36100000-36118400	Weak transcription	A549	lung
4	chr11:36100600-36139600	Weak transcription	HMEC	breast
5	chr11:36101000-36117800	Weak transcription	Aorta	Aorta
6	chr11:36103400-36114600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:36104400-36114400	Weak transcription	Fetal Brain Female	brain
8	chr11:36105600-36114400	Weak transcription	Fetal Intestine Large	intestine
9	chr11:36106800-36116600	Weak transcription	Hela-S3	cervix
10	chr11:36108200-36114200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:36109600-36115000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:36110000-36114800	Weak transcription	Fetal Stomach	stomach
13	chr11:36110200-36113800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:36110200-36115200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:36110600-36114200	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:36110600-36114200	Weak transcription	Ovary	ovary
17	chr11:36110600-36119800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:36110800-36114200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:36110800-36114400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:36110800-36114400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:36110800-36115000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:36110800-36119400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:36110800-36119600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:36110800-36119600	Weak transcription	NHDF-Ad	bronchial
25	chr11:36111000-36117200	Weak transcription	NHEK	skin
26	chr11:36111400-36114000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr11:36111600-36113800	Enhancers	K562	blood
28	chr11:36111600-36114600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:36111600-36115000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:36111800-36114600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:36111800-36114800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:36111800-36117000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:36112000-36114600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr11:36112000-36114600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:36112000-36114800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:36112000-36115000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr11:36112000-36115800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:36112200-36113600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:36112200-36113600	Enhancers	HUVEC	blood vessel
40	chr11:36112200-36114600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:36112200-36114600	Enhancers	Osteobl	bone
42	chr11:36112400-36114200	Enhancers	NHLF	lung
43	chr11:36112400-36114400	Enhancers	NH-A	brain
44	chr11:36112400-36114600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:36112400-36115000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr11:36112600-36114400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:36112600-36114600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:36112600-36114600	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:36112600-36114600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:36112600-36114600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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