Variant report

Variant	rs16928528
Chromosome Location	chr10:28426617-28426618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16928532	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16928547	1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs41306320	0.83[AMR][1000 genomes]
rs73606080	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606081	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73606083	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608040	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73608041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608044	0.85[AFR][1000 genomes]
rs73608048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894989	chr10:28384098-28449974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv949151	chr10:28386125-28455221	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
10	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:28403600-28443200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:28409600-28427800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:28413200-28440600	Weak transcription	Left Ventricle	heart
5	chr10:28417000-28449200	Weak transcription	Pancreas	Pancrea
6	chr10:28417600-28458000	Weak transcription	Aorta	Aorta
7	chr10:28421200-28428200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:28423800-28428400	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr10:28425200-28427600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr10:28425200-28428000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr10:28425600-28427000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:28425800-28427400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr10:28426200-28427200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:28426400-28427000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:28426400-28428400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:28426400-28435800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:28426600-28426800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
18	chr10:28426600-28427200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr10:28426600-28427200	Enhancers	HSMMtube	muscle
20	chr10:28426600-28427400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:28426600-28427800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:28426600-28428200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:28426600-28428400	Enhancers	NH-A	brain
24	chr10:28426600-28428400	Enhancers	Osteobl	bone
25	chr10:28426600-28428600	Enhancers	HSMM	muscle
26	chr10:28426600-28431200	Enhancers	HUVEC	blood vessel

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